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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
21
DNase-seq
4
ATAC-seq
2
Capture-C
2
Hi-C
2
pCHi-C
total RNA-seq
Assay category
25
DNA accessibility
25
DNA binding
2
3D chromatin structure
Target of assay
13
histone
13
histone modification
7
narrow histone mark
6
broad histone mark
6
control
6
transcription factor
Date released
19
June, 2019
15
December, 2017
7
August, 2017
5
August, 2021
4
February, 2023
2
February, 2021
2
October, 2019
1
July, 2019
1
November, 2020
Available data
1067
bam
979
bigWig
832
fastq
809
bed narrowPeak
457
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
131
tsv
94
bed broadPeak
94
bigBed broadPeak
56
bed bed3+
12
bedpe bed3+
10
bed bedMethyl
10
bigBed bedMethyl
10
hic
7
bed bed3
7
bed bedgraph
4
txt
3
cool
3
tar
2
csv
2
hdf5
2
ibed
1
vcf
Organism
56
Homo sapiens
Biosample type
tissue
25
in vitro differentiated cells
25
primary cell
3
cell line
3
stem cell
Organ
21
connective tissue
21
epithelium
10
kidney
brain
8
vasculature
7
liver
6
blood vessel
3
embryo
3
heart
2
pancreas
vein
1
eye
1
musculature of body
Project
56
AMP
Genome assembly (visualization)
49
hg19
47
GRCh38
Lab
54
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
Audit category:
10
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
biosample_type!
tissue
organ_slims!
brain
vein
BIOSAMPLE
ASSAY
56 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
in vitro differentiated cells
adipocyte
7
1
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
+ See 3 more…
primary cell
hepatocyte
3
1
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
osteoblast
1
1
+ See 12 more…
cell line
Panc1
1
1
HepG2
1
stem cell
hESC
3
See all biosamples
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