Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
379
ChIP-seq
total RNA-seq
2
ATAC-seq
2
DNase-seq
2
Hi-C
2
pCHi-C
1
RRBS
1
WGBS
Assay category
379
DNA binding
4
DNA accessibility
2
3D chromatin structure
2
DNA methylation
Target of assay
288
transcription factor
82
recombinant protein
58
control
55
RNA binding protein
30
histone
30
histone modification
21
chromatin remodeller
16
broad histone mark
14
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
46
November, 2018
15
December, 2017
4
August, 2021
2
February, 2021
2
July, 2019
2
June, 2019
1
December, 2018
1
May, 2020
1
October, 2019
Available data
383
bam
377
fastq
333
bigWig
314
bed narrowPeak
309
bigBed narrowPeak
60
bed broadPeak
60
bigBed broadPeak
16
tagAlign
7
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
hdf5
1
tsv
Organism
389
Homo sapiens
Biosample type
365
cell line
tissue
15
in vitro differentiated cells
9
primary cell
Organ
389
liver
380
epithelium
327
pancreas
118
connective tissue
69
blood
69
bodily fluid
49
vasculature
43
blood vessel
43
kidney
23
embryo
23
heart
22
vein
21
brain
14
artery
13
musculature of body
5
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
Project
389
AMP
Genome assembly (visualization)
332
hg19
283
GRCh38
Lab
389
AMP-T2D consortium
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_title!
total RNA-seq
biosample_type!
tissue
lab.title!
Bing Ren, UCSD
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
389 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
RRBS
WGBS
cell line
HepG2
360
1
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
Download