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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
324
ChIP-seq
total RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
324
DNA binding
2
DNA accessibility
Target of assay
244
transcription factor
66
recombinant protein
59
control
37
RNA binding protein
18
histone
18
histone modification
15
chromatin remodeller
10
narrow histone mark
8
broad histone mark
2
other context
2
other post-translational modification
Date released
324
November, 2017
216
May, 2021
134
May, 2022
127
August, 2017
101
May, 2020
69
February, 2021
66
August, 2021
64
October, 2019
62
November, 2018
55
June, 2019
48
July, 2018
47
September, 2018
46
December, 2017
43
April, 2018
43
September, 2020
30
February, 2023
28
December, 2018
24
February, 2018
20
November, 2019
18
January, 2019
18
July, 2019
March, 2020
8
January, 2021
7
August, 2020
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
December, 2019
2
November, 2020
Available data
325
bam
324
fastq
278
bigWig
257
bed narrowPeak
256
bigBed narrowPeak
65
bed broadPeak
65
bigBed broadPeak
12
tagAlign
3
tar
1
bed bed3+
Organism
326
Homo sapiens
Biosample type
315
cell line
tissue
11
primary cell
Organ
315
liver
9
brain
6
epithelium
6
vasculature
3
blood vessel
2
connective tissue
Project
326
AMP
Genome assembly (visualization)
277
hg19
225
GRCh38
Lab
326
AMP-T2D consortium
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
assay_title!
total RNA-seq
biosample_type!
tissue
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
March, 2020
BIOSAMPLE
ASSAY
326 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
315
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
osteoblast
1
1
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