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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
68
ChIP-seq
27
snATAC-seq
14
ATAC-seq
13
single cell RNA-seq
7
WGBS
2
pCHi-C
Assay category
68
DNA binding
41
DNA accessibility
13
Transcription
7
DNA methylation
Target of assay
62
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
Date released
324
November, 2017
216
May, 2021
134
May, 2022
127
August, 2017
101
May, 2020
69
February, 2021
66
August, 2021
64
October, 2019
62
November, 2018
55
June, 2019
48
July, 2018
47
September, 2018
46
December, 2017
43
April, 2018
43
September, 2020
30
February, 2023
28
December, 2018
24
February, 2018
20
November, 2019
18
January, 2019
18
July, 2019
18
March, 2020
8
January, 2021
8
November, 2020
7
August, 2020
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
December, 2019
Available data
107
fastq
80
bam
71
bed narrowPeak
63
bigWig
56
bigBed narrowPeak
8
tagAlign
6
tsv
4
bed bedgraph
2
bed bed3
2
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
Organism
131
Homo sapiens
Biosample type
tissue
79
cell line
48
primary cell
4
in vitro differentiated cells
Organ
48
liver
15
blood
15
bodily fluid
14
artery
14
blood vessel
14
heart
14
vasculature
6
connective tissue
6
epithelium
6
pancreas
Project
86
AMP
45
HPAP
Genome assembly (visualization)
75
hg19
72
GRCh38
Lab
86
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
27
audit script error
1
inconsistent replicate
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
total RNA-seq
biosample_type!
tissue
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
131 results
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Clear Filters
ChIP-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
WGBS
pCHi-C
cell line
HepG2
45
1
1
1
GM12878
15
smooth muscle cell of the coronary artery
6
8
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
pancreatic cell
1
in vitro differentiated cells
adipocyte
4
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