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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
ATAC-seq
105
ChIP-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
total RNA-seq
23
pCHi-C
10
RRBS
9
Hi-C
6
MeRIP-seq
5
STARR-seq
2
Capture-C
2
DNase-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
194
DNA accessibility
105
DNA binding
89
Transcription
58
DNA methylation
9
3D chromatin structure
1
DNA sequencing
Target of assay
95
control
8
histone
8
histone modification
5
broad histone mark
5
transcription factor
3
narrow histone mark
3
nucleotide modification
2
RNA binding protein
1
recombinant protein
Date released
134
May, 2022
59
February, 2021
56
May, 2020
50
May, 2021
47
November, 2017
40
September, 2020
21
October, 2019
February, 2023
14
August, 2021
13
August, 2017
9
July, 2019
8
January, 2021
8
June, 2019
7
November, 2020
5
March, 2020
5
November, 2018
4
November, 2019
4
October, 2022
3
January, 2019
3
March, 2023
1
December, 2018
1
May, 2019
1
September, 2018
Available data
937
bam
bigWig
711
fastq
699
bed narrowPeak
464
bigBed narrowPeak
153
zippedFastqFolder
120
tagAlign
114
tsv
108
bed broadPeak
108
bigBed broadPeak
38
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
8
hic
6
bedpe bed3+
5
hdf5
4
tar
3
cool
2
bed bed3
2
csv
1
txt
1
vcf
Organism
490
Homo sapiens
Biosample type
787
tissue
368
primary cell
125
cell line
117
in vitro differentiated cells
7
stem cell
Organ
150
epithelium
136
pancreas
63
liver
18
vasculature
17
blood vessel
15
kidney
14
blood
14
bodily fluid
13
heart
10
artery
7
connective tissue
7
vein
3
musculature of body
2
eye
1
bone element
1
bone marrow
1
brain
1
mammary gland
Project
244
AMP
222
HPAP
24
T1D
2
community
1
ITG
Genome assembly (visualization)
45
hg19
27
GRCh38
Lab
227
AMP-T2D consortium
222
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
11
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
1
ITG
Audit category:
44
inconsistent ontology term
31
audit script error
1
inconsistent replicate
Audit category:
1
missing controlled_by
assay_title!
total RNA-seq
files.file_type!
bigWig
month_released!
February, 2023
BIOSAMPLE
ASSAY
493 results
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Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
MeRIP-seq
STARR-seq
Capture-C
DNase-seq
DNAme array
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
6
31
1
pancreatic beta cell
13
6
16
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
+ See 36 more…
cell line
HepG2
1
52
2
2
2
1
EndoC_BH1
17
2
1
6
2
smooth muscle cell of the coronary artery
8
2
Panc1
7
GM12878
6
+ See 11 more…
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