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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ATAC-seq
19
ChIP-seq
total RNA-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
Hi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
26
DNA accessibility
19
DNA binding
2
3D chromatin structure
2
Transcription
1
DNA sequencing
Target of assay
21
control
3
nucleotide modification
1
broad histone mark
1
histone
1
histone modification
Date released
16
May, 2021
13
August, 2021
13
February, 2021
10
October, 2019
6
February, 2023
6
November, 2020
4
March, 2020
4
November, 2019
2
March, 2023
1
May, 2020
1
October, 2022
Available data
478
bam
fastq
bigWig
404
bed narrowPeak
355
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
6
tsv
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
72
Homo sapiens
Biosample type
777
tissue
298
primary cell
102
in vitro differentiated cells
76
cell line
6
stem cell
Organ
36
pancreas
29
epithelium
11
liver
10
artery
10
blood vessel
10
heart
10
vasculature
7
kidney
1
mammary gland
Project
69
AMP
5
T1D
2
community
Genome assembly (visualization)
13
hg19
10
GRCh38
Lab
52
AMP-T2D consortium
11
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
34
inconsistent ontology term
1
inconsistent replicate
assay_title!
total RNA-seq
files.file_type!
bigWig
fastq
BIOSAMPLE
ASSAY
76 results
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Clear Filters
ATAC-seq
ChIP-seq
MeRIP-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
Hi-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
EndoC_BH1
17
2
6
3
2
1
2
1
HepG2
1
4
2
2
1
1
smooth muscle cell of the coronary artery
8
2
Panc1
7
EndoC-BH1
1
1
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