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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
447
ChIP-seq
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
447
DNA binding
12
DNA accessibility
1
DNA methylation
Target of assay
335
transcription factor
89
recombinant protein
73
control
58
RNA binding protein
34
histone
34
histone modification
24
chromatin remodeller
18
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
61
November, 2018
27
December, 2018
25
October, 2019
January, 2019
17
February, 2021
14
November, 2019
1
March, 2020
1
May, 2021
Available data
460
bam
404
fastq
403
bigWig
389
bed narrowPeak
340
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
6
tsv
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
460
Homo sapiens
Biosample type
999
tissue
460
cell line
459
primary cell
164
in vitro differentiated cells
3
stem cell
Organ
361
liver
42
blood
42
bodily fluid
30
pancreas
17
epithelium
14
artery
14
blood vessel
14
heart
14
vasculature
11
kidney
Project
458
AMP
2
T1D
Genome assembly (visualization)
390
hg19
344
GRCh38
Lab
460
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_title!
total RNA-seq
month_released!
January, 2019
BIOSAMPLE
ASSAY
460 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
359
1
1
GM12878
42
EndoC_BH1
15
1
Panc1
13
1
smooth muscle cell of the coronary artery
6
8
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