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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
5
pCHi-C
1
ATAC-seq
Assay category
1
DNA accessibility
Date released
5
March, 2020
1
May, 2020
Available data
478
bam
422
fastq
418
bigWig
404
bed narrowPeak
355
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
6
tsv
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
6
Homo sapiens
Biosample type
151
tissue
120
primary cell
6
cell line
4
in vitro differentiated cells
4
stem cell
Organ
2
kidney
1
epithelium
1
liver
1
mammary gland
1
pancreas
Project
6
AMP
Genome assembly (visualization)
1
hg19
Lab
6
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_title!
total RNA-seq
files.file_type!
ibed
organ_slims!
skeleton
BIOSAMPLE
ASSAY
6 results
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pCHi-C
ATAC-seq
cell line
EndoC_BH1
1
HepG2
1
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
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