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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
19
ATAC-seq
3
ChIP-seq
3
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
20
DNA accessibility
3
DNA binding
1
3D chromatin structure
Target of assay
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
5
control
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
16
May, 2021
5
November, 2019
3
November, 2020
2
August, 2021
2
March, 2020
1
February, 2023
1
October, 2019
Available data
5
bam
4
bigWig
3
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
hic
1
tsv
Organism
29
Homo sapiens
Biosample type
247
primary cell
30
cell line
13
tissue
7
in vitro differentiated cells
Organ
369
liver
60
blood
60
bodily fluid
37
pancreas
30
epithelium
15
kidney
14
artery
14
blood vessel
14
heart
14
vasculature
1
mammary gland
Project
30
AMP
Genome assembly (visualization)
6
hg19
3
GRCh38
Lab
27
AMP-T2D consortium
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
assay_title!
total RNA-seq
target.investigated_as!
histone
nucleotide modification
BIOSAMPLE
ASSAY
30 results
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Clear Filters
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
cell line
EndoC_BH1
19
3
3
2
1
1
glomerular visceral epithelial cell
1
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