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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
total RNA-seq
42
ATAC-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
198
DNA binding
43
DNA accessibility
2
Transcription
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
68
August, 2017
48
May, 2021
43
December, 2017
35
August, 2021
24
February, 2018
12
February, 2023
5
November, 2019
4
February, 2021
4
January, 2018
4
October, 2019
2
December, 2019
2
March, 2020
Available data
164
bam
132
bed narrowPeak
132
bigWig
126
fastq
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
bedpe bed3+
5
bed bed3
4
hic
4
tsv
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
251
Homo sapiens
Biosample type
tissue
837
primary cell
547
cell line
251
in vitro differentiated cells
10
stem cell
Organ
87
connective tissue
23
embryo
22
epithelium
15
liver
3
pancreas
Project
251
AMP
Genome assembly (visualization)
164
hg19
138
GRCh38
4
hg18
Lab
202
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
20
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
total RNA-seq
biosample_type!
tissue
files.file_type!
bedpe
bedpe bed3+
BIOSAMPLE
ASSAY
251 results
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Clear Filters
ChIP-seq
ATAC-seq
GRO-seq
Capture-C
pCHi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
8
1
1
embryonic stem cell
40
6
1
neural progenitor cell
21
10
pancreatic endoderm
18
1
hepatocyte
15
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