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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
ChIP-seq
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
143
DNA binding
43
DNA accessibility
4
3D chromatin structure
2
Transcription
Target of assay
112
histone
112
histone modification
56
broad histone mark
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
52
August, 2017
37
May, 2021
30
December, 2017
28
August, 2021
16
February, 2018
12
February, 2023
6
March, 2020
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
2
December, 2019
1
August, 2018
Available data
123
bam
93
fastq
92
bed narrowPeak
92
bigWig
28
tagAlign
21
bed bed3+
12
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
4
tsv
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
203
Homo sapiens
Biosample type
tissue
726
primary cell
530
cell line
203
in vitro differentiated cells
9
stem cell
Organ
72
connective tissue
15
embryo
14
epithelium
10
liver
2
pancreas
1
adipose tissue
Project
203
AMP
Genome assembly (visualization)
130
hg19
98
GRCh38
4
hg18
Lab
164
AMP-T2D consortium
32
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
24
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
15
inconsistent control read length
assay_title!
total RNA-seq
biosample_type!
tissue
files.file_type!
bedpe
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
203 results
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ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
51
8
1
1
embryonic stem cell
29
6
1
neural progenitor cell
14
10
pancreatic endoderm
12
1
hepatocyte
10
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