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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
477
ChIP-seq
total RNA-seq
203
ATAC-seq
137
single cell RNA-seq
35
snATAC-seq
32
DNase-seq
22
pCHi-C
10
Hi-C
10
RRBS
6
WGBS
4
GRO-seq
2
Capture-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
477
DNA binding
271
DNA accessibility
139
Transcription
17
DNA methylation
10
3D chromatin structure
Target of assay
349
histone
349
histone modification
178
broad histone mark
170
narrow histone mark
72
control
59
transcription factor
21
RNA binding protein
4
chromatin remodeller
Date released
199
May, 2021
127
August, 2017
100
May, 2020
55
June, 2019
51
February, 2021
48
July, 2018
47
September, 2018
43
April, 2018
43
December, 2017
39
August, 2021
38
October, 2019
24
February, 2018
24
February, 2023
24
September, 2020
14
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
7
March, 2020
5
May, 2019
5
November, 2019
5
September, 2017
4
August, 2018
4
January, 2018
3
June, 2018
3
October, 2022
2
December, 2019
2
November, 2020
1
March, 2023
1
November, 2018
Available data
623
bam
593
bigWig
427
bed narrowPeak
415
fastq
zippedFastqFolder
140
tagAlign
126
bigBed narrowPeak
124
tsv
60
bed bed3+
50
bed broadPeak
50
bigBed broadPeak
11
bedpe bed3+
10
bed bedMethyl
10
bigBed bedMethyl
10
hic
7
bed bedgraph
6
bed bed3
hdf5
3
cool
3
txt
2
csv
2
ibed
1
tar
Organism
942
Homo sapiens
Biosample type
1746
tissue
684
primary cell
548
cell line
258
in vitro differentiated cells
10
stem cell
Organ
253
epithelium
188
pancreas
116
connective tissue
33
vasculature
30
kidney
27
blood vessel
23
embryo
23
liver
22
vein
18
brain
13
musculature of body
9
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
1
bone element
1
bone marrow
Project
754
AMP
108
T1D
79
HPAP
1
ITG
Genome assembly (visualization)
642
hg19
524
GRCh38
4
hg18
Lab
672
AMP-T2D consortium
183
Kyle Gaulton, UCSD
79
Klaus Kaestner, Upenn
7
Struan F.A. Grant, CHOP
1
ITG
Audit category:
76
inconsistent ontology term
33
audit script error
Audit category:
50
missing controlled_by
Audit category:
22
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
files.file_type!
hdf5
zippedFastqFolder
BIOSAMPLE
ASSAY
942 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
WGBS
GRO-seq
Capture-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
Langerhans cell
33
27
pancreatic alpha cell
13
13
12
1
6
CD8-positive, alpha-beta T cell
33
2
1
pancreatic beta cell
13
10
12
1
+ See 85 more…
in vitro differentiated cells
adipocyte
67
8
1
1
embryonic stem cell
40
6
1
neural progenitor cell
21
10
pancreatic endoderm
18
1
hepatocyte
15
+ See 19 more…
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