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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
357
ChIP-seq
239
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
22
pCHi-C
14
Hi-C
9
RRBS
4
GRO-seq
2
Capture-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
357
DNA binding
325
DNA accessibility
191
Transcription
57
DNA methylation
14
3D chromatin structure
Target of assay
274
histone
274
histone modification
142
broad histone mark
132
narrow histone mark
51
control
35
transcription factor
15
RNA binding protein
1
chromatin remodeller
Date released
199
May, 2021
134
May, 2022
August, 2017
100
May, 2020
55
June, 2019
51
February, 2021
48
July, 2018
47
September, 2018
43
April, 2018
43
December, 2017
43
September, 2020
39
August, 2021
38
October, 2019
24
February, 2018
24
February, 2023
18
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
7
March, 2020
5
May, 2019
5
November, 2019
5
September, 2017
4
August, 2018
4
January, 2018
3
June, 2018
3
October, 2022
2
December, 2019
2
November, 2020
1
March, 2023
1
November, 2018
Available data
511
bam
499
bigWig
351
bed narrowPeak
303
fastq
153
zippedFastqFolder
124
tsv
114
tagAlign
106
bigBed narrowPeak
53
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
11
bedpe bed3+
10
hic
9
bed bedMethyl
9
bigBed bedMethyl
7
bed bedgraph
6
bed bed3
4
hdf5
3
cool
3
txt
2
csv
2
ibed
1
tar
Organism
972
Homo sapiens
Biosample type
1458
tissue
782
primary cell
549
cell line
190
in vitro differentiated cells
10
stem cell
Organ
306
epithelium
227
pancreas
49
connective tissue
35
vasculature
30
kidney
29
blood vessel
24
liver
23
embryo
22
vein
21
brain
13
musculature of body
9
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
1
bone element
1
bone marrow
Project
631
AMP
232
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
550
hg19
433
GRCh38
4
hg18
Lab
549
AMP-T2D consortium
232
Klaus Kaestner, Upenn
183
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
1
ITG
Audit category:
76
inconsistent ontology term
33
audit script error
Audit category:
33
missing controlled_by
Audit category:
11
inconsistent control read length
assay_title!
total RNA-seq
lab.title!
Katalin Susztak, Upenn
month_released!
August, 2017
BIOSAMPLE
ASSAY
972 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
GRO-seq
Capture-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
monocyte
85
15
1
1
pancreatic alpha cell
34
12
31
1
pancreatic beta cell
22
12
16
1
CD8-positive, alpha-beta T cell
33
2
1
+ See 85 more…
in vitro differentiated cells
embryonic stem cell
40
6
1
neural progenitor cell
21
10
pancreatic endoderm
18
1
hepatocyte
15
adipocyte
8
1
+ See 19 more…
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