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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ChIP-seq
total RNA-seq
33
ATAC-seq
5
pCHi-C
4
GRO-seq
2
Capture-C
2
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
158
DNA binding
34
DNA accessibility
2
3D chromatin structure
2
Transcription
Target of assay
86
histone
86
histone modification
45
transcription factor
43
narrow histone mark
42
broad histone mark
27
control
11
RNA binding protein
3
chromatin remodeller
Date released
54
August, 2017
43
December, 2017
42
May, 2021
24
February, 2018
15
August, 2021
7
February, 2023
6
March, 2020
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
2
December, 2019
1
August, 2018
Available data
162
bam
130
bed narrowPeak
130
bigWig
126
fastq
tagAlign
25
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
bed bed3
5
bedpe bed3+
4
tsv
3
txt
2
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
207
Homo sapiens
Biosample type
1332
tissue
708
primary cell
502
cell line
207
in vitro differentiated cells
10
stem cell
Organ
67
connective tissue
23
embryo
19
epithelium
15
liver
1
adipose tissue
Project
207
AMP
Genome assembly (visualization)
142
hg19
118
GRCh38
4
hg18
Lab
158
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
19
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
total RNA-seq
files.file_type!
bed bed3
tagAlign
month_released!
October, 2019
BIOSAMPLE
ASSAY
207 results
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Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Capture-C
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
53
6
1
1
embryonic stem cell
40
6
1
pancreatic endoderm
18
1
hepatocyte
15
neural progenitor cell
1
10
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