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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
ChIP-seq
total RNA-seq
21
ATAC-seq
5
pCHi-C
4
GRO-seq
2
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
177
DNA binding
22
DNA accessibility
2
3D chromatin structure
2
Transcription
Target of assay
98
histone
98
histone modification
49
broad histone mark
49
transcription factor
48
narrow histone mark
30
control
11
RNA binding protein
3
chromatin remodeller
Date released
68
August, 2017
48
May, 2021
43
December, 2017
August, 2021
24
February, 2018
7
February, 2023
6
March, 2020
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
2
December, 2019
1
August, 2018
Available data
132
bam
126
fastq
115
bigWig
105
bed narrowPeak
23
bed bed3+
20
tagAlign
15
bigBed narrowPeak
7
bed bedgraph
bed bed3
5
bedpe bed3+
4
tsv
3
txt
2
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
212
Homo sapiens
Biosample type
1342
tissue
804
primary cell
495
cell line
212
in vitro differentiated cells
10
stem cell
Organ
77
connective tissue
23
embryo
22
epithelium
15
liver
3
pancreas
1
adipose tissue
Project
212
AMP
Genome assembly (visualization)
133
hg19
113
GRCh38
4
hg18
Lab
167
AMP-T2D consortium
42
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
22
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
total RNA-seq
files.file_type!
bed bed3
month_released!
August, 2021
October, 2019
BIOSAMPLE
ASSAY
212 results
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ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
1
embryonic stem cell
40
6
1
pancreatic endoderm
18
1
hepatocyte
15
definitive endodermal cell
8
1
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