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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
88
ChIP-seq
21
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
88
DNA binding
21
DNA accessibility
4
3D chromatin structure
2
Transcription
Target of assay
37
control
34
histone
34
histone modification
19
broad histone mark
17
transcription factor
15
narrow histone mark
5
RNA binding protein
Date released
43
May, 2021
25
August, 2017
10
August, 2021
10
February, 2023
9
December, 2017
8
February, 2018
6
March, 2020
4
February, 2021
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
164
bam
bed narrowPeak
132
bigWig
126
fastq
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
4
tsv
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
126
Homo sapiens
Biosample type
757
tissue
546
primary cell
145
cell line
126
in vitro differentiated cells
8
stem cell
Organ
43
connective tissue
9
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
126
AMP
Genome assembly (visualization)
39
hg19
10
GRCh38
4
hg18
Lab
81
AMP-T2D consortium
42
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
13
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
assay_title!
total RNA-seq
files.file_type!
bed narrowPeak
month_released!
March, 2019
BIOSAMPLE
ASSAY
126 results
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ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
38
5
1
adipocyte
25
7
1
neural progenitor cell
8
pancreatic endoderm
6
1
cardiomyocytes (cardiac muscle cell)
2
2
2
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