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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
total RNA-seq
4
GRO-seq
1
DNase-seq
1
pCHi-C
Assay category
120
DNA binding
1
DNA accessibility
Target of assay
65
histone
65
histone modification
33
narrow histone mark
33
transcription factor
31
broad histone mark
22
control
6
RNA binding protein
3
chromatin remodeller
Date released
54
August, 2017
43
December, 2017
24
February, 2018
4
January, 2018
1
August, 2018
Available data
164
bam
132
bed narrowPeak
132
bigWig
126
fastq
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
4
tsv
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
126
Homo sapiens
Biosample type
422
cell line
289
primary cell
273
tissue
126
in vitro differentiated cells
4
stem cell
Organ
55
connective tissue
23
embryo
19
epithelium
15
liver
1
adipose tissue
Project
126
AMP
Genome assembly (visualization)
103
GRCh38
103
hg19
4
hg18
Lab
126
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
total RNA-seq
month_released!
April, 2019
BIOSAMPLE
ASSAY
126 results
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ChIP-seq
GRO-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
53
1
pancreatic endoderm
18
1
hepatocyte
15
definitive endodermal cell
8
1
primitive gut cell
8
1
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