Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
161
DNA binding
38
DNA accessibility
4
3D chromatin structure
2
Transcription
Target of assay
92
histone
92
histone modification
46
broad histone mark
45
narrow histone mark
37
transcription factor
32
control
6
RNA binding protein
3
chromatin remodeller
Date released
68
August, 2017
43
December, 2017
35
August, 2021
24
February, 2018
12
February, 2023
6
March, 2020
6
May, 2021
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
2
December, 2019
1
August, 2018
Available data
164
bam
132
bed narrowPeak
127
bigWig
126
fastq
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
4
tsv
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
216
Homo sapiens
Biosample type
1476
tissue
511
cell line
467
primary cell
216
in vitro differentiated cells
8
stem cell
Organ
88
connective tissue
23
embryo
22
epithelium
15
liver
3
pancreas
1
adipose tissue
Project
216
AMP
Genome assembly (visualization)
165
hg19
138
GRCh38
4
hg18
Lab
209
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
26
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
total RNA-seq
month_released!
March, 2019
BIOSAMPLE
ASSAY
216 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
8
1
1
neural progenitor cell
21
10
pancreatic endoderm
18
1
hepatocyte
15
definitive endodermal cell
8
1
+ See 19 more…
See all biosamples
Download