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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
ChIP-seq
total RNA-seq
30
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
177
DNA binding
31
DNA accessibility
4
3D chromatin structure
2
Transcription
Target of assay
98
histone
98
histone modification
49
broad histone mark
49
transcription factor
48
narrow histone mark
30
control
11
RNA binding protein
3
chromatin remodeller
Date released
68
August, 2017
48
May, 2021
43
December, 2017
August, 2021
24
February, 2018
12
February, 2023
6
March, 2020
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
2
December, 2019
1
August, 2018
Available data
134
bam
126
fastq
117
bigWig
107
bed narrowPeak
23
bed bed3+
20
tagAlign
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
4
tsv
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
223
Homo sapiens
Biosample type
1529
tissue
837
primary cell
522
cell line
223
in vitro differentiated cells
10
stem cell
Organ
84
connective tissue
23
embryo
22
epithelium
15
liver
3
pancreas
1
adipose tissue
Project
223
AMP
Genome assembly (visualization)
144
hg19
115
GRCh38
4
hg18
Lab
178
AMP-T2D consortium
42
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
26
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
total RNA-seq
month_released!
August, 2021
organ_slims!
nerve
BIOSAMPLE
ASSAY
223 results
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ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
7
1
embryonic stem cell
40
6
1
pancreatic endoderm
18
1
hepatocyte
15
definitive endodermal cell
8
1
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