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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
124
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
124
DNA binding
43
DNA accessibility
4
3D chromatin structure
2
Transcription
Target of assay
88
histone
88
histone modification
45
broad histone mark
42
narrow histone mark
38
transcription factor
control
9
RNA binding protein
chromatin remodeller
Date released
58
August, 2017
42
May, 2021
December, 2017
28
August, 2021
16
February, 2018
12
February, 2023
6
March, 2020
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
2
December, 2019
1
August, 2018
Available data
97
bam
96
bed narrowPeak
96
bigWig
67
fastq
30
tagAlign
12
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
4
tsv
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
184
Homo sapiens
Biosample type
1523
tissue
805
primary cell
436
cell line
184
in vitro differentiated cells
7
stem cell
Organ
78
connective tissue
7
embryo
2
epithelium
2
pancreas
1
adipose tissue
Project
184
AMP
Genome assembly (visualization)
129
hg19
97
GRCh38
4
hg18
Lab
140
AMP-T2D consortium
37
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
22
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
total RNA-seq
month_released!
December, 2017
target.investigated_as!
chromatin remodeller
control
BIOSAMPLE
ASSAY
184 results
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ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
57
8
1
1
embryonic stem cell
34
6
1
neural progenitor cell
14
10
cardiomyocytes (cardiac muscle cell)
1
2
2
2
pancreatic endoderm
6
1
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