Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
195
DNA binding
43
DNA accessibility
4
3D chromatin structure
2
Transcription
Target of assay
111
histone
111
histone modification
56
broad histone mark
54
narrow histone mark
48
transcription factor
36
control
11
RNA binding protein
3
chromatin remodeller
Date released
68
August, 2017
45
May, 2021
43
December, 2017
35
August, 2021
24
February, 2018
12
February, 2023
6
March, 2020
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
2
December, 2019
1
August, 2018
Available data
161
bam
130
bed narrowPeak
130
bigWig
126
fastq
37
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
4
tsv
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
255
Homo sapiens
Biosample type
1365
tissue
521
primary cell
490
cell line
255
in vitro differentiated cells
10
stem cell
Organ
88
connective tissue
23
embryo
22
epithelium
15
liver
pancreas
1
adipose tissue
Project
255
AMP
Genome assembly (visualization)
168
hg19
136
GRCh38
4
hg18
Lab
206
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
26
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
total RNA-seq
month_released!
June, 2019
organ_slims!
pancreas
BIOSAMPLE
ASSAY
255 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
8
1
1
embryonic stem cell
40
6
1
neural progenitor cell
21
10
pancreatic endoderm
18
1
hepatocyte
15
+ See 18 more…
See all biosamples
Download