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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
282
ChIP-seq
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
21
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
GRO-seq
Assay category
288
DNA accessibility
282
DNA binding
191
Transcription
58
DNA methylation
10
3D chromatin structure
Target of assay
239
histone
239
histone modification
123
broad histone mark
116
narrow histone mark
36
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
134
May, 2022
100
May, 2020
59
August, 2017
55
June, 2019
48
July, 2018
47
February, 2021
47
September, 2018
43
April, 2018
43
September, 2020
32
October, 2019
18
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
7
August, 2020
5
March, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
December, 2017
3
June, 2018
3
March, 2023
3
October, 2022
2
November, 2020
1
January, 2018
1
November, 2018
Available data
464
bigWig
462
bam
297
bed narrowPeak
293
fastq
153
zippedFastqFolder
124
tsv
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
38
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
849
Homo sapiens
Biosample type
1744
tissue
841
primary cell
549
cell line
258
in vitro differentiated cells
10
stem cell
Organ
313
epithelium
265
pancreas
35
vasculature
30
connective tissue
30
kidney
29
blood vessel
22
vein
21
brain
13
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
508
AMP
232
HPAP
108
T1D
2
community
1
ITG
Genome assembly (visualization)
479
hg19
389
GRCh38
1
hg18
Lab
475
AMP-T2D consortium
232
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
1
ITG
Audit category:
51
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
7
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
851 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
FAIRE-seq
GRO-seq
primary cell
Langerhans cell
85
48
monocyte
85
15
1
1
pancreatic alpha cell
13
35
12
31
1
pancreatic beta cell
13
23
12
16
1
CD8-positive, alpha-beta T cell
33
2
1
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stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
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