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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
179
ChIP-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
10
RRBS
6
Hi-C
4
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
261
DNA accessibility
189
Transcription
179
DNA binding
58
DNA methylation
6
3D chromatin structure
Target of assay
139
histone
139
histone modification
71
broad histone mark
68
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
100
May, 2020
67
May, 2021
48
July, 2018
47
August, 2017
47
September, 2018
46
February, 2021
43
April, 2018
43
September, 2020
31
June, 2019
30
October, 2019
14
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
1
March, 2020
1
March, 2023
1
November, 2018
1
November, 2020
Available data
461
bigWig
459
bam
295
bed narrowPeak
289
fastq
153
zippedFastqFolder
120
tsv
109
bigBed narrowPeak
tagAlign
49
bed broadPeak
49
bigBed broadPeak
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
709
Homo sapiens
Biosample type
1267
tissue
709
primary cell
526
cell line
193
in vitro differentiated cells
7
stem cell
Organ
291
epithelium
265
pancreas
27
vasculature
23
blood vessel
21
connective tissue
20
kidney
20
vein
13
brain
12
musculature of body
8
blood
8
bodily fluid
6
heart
4
eye
2
liver
1
adipose tissue
1
bone element
1
bone marrow
Project
452
AMP
232
HPAP
24
T1D
1
ITG
Genome assembly (visualization)
352
hg19
261
GRCh38
Lab
419
AMP-T2D consortium
232
Klaus Kaestner, Upenn
57
Kyle Gaulton, UCSD
1
ITG
Audit category:
47
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
files.file_type!
bed bed3+
tagAlign
organ_slims!
nerve
BIOSAMPLE
ASSAY
709 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
35
12
13
31
1
pancreatic beta cell
23
12
13
16
1
CD8-positive, alpha-beta T cell
2
33
1
pancreatic acinar cell
9
12
8
1
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