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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
total RNA-seq
197
ATAC-seq
99
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
285
DNA accessibility
279
DNA binding
101
Transcription
48
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
134
May, 2022
100
May, 2020
58
August, 2017
55
June, 2019
July, 2018
47
February, 2021
47
September, 2018
43
April, 2018
September, 2020
32
October, 2019
12
February, 2023
9
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
411
bam
410
bigWig
295
bed narrowPeak
216
fastq
134
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
72
tsv
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
740
Homo sapiens
Biosample type
1721
tissue
740
primary cell
548
cell line
258
in vitro differentiated cells
10
stem cell
Organ
271
epithelium
225
pancreas
34
vasculature
29
blood vessel
27
kidney
26
connective tissue
22
vein
20
brain
12
musculature of body
8
blood
8
bodily fluid
8
heart
8
liver
4
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
442
AMP
189
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
418
hg19
335
GRCh38
Lab
409
AMP-T2D consortium
189
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
42
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
files.file_type!
bigBed bedMethyl
month_released!
July, 2018
September, 2020
BIOSAMPLE
ASSAY
740 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
Langerhans cell
45
48
pancreatic alpha cell
13
33
5
31
1
pancreatic beta cell
13
22
3
16
1
CD8-positive, alpha-beta T cell
33
2
1
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