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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
255
ChIP-seq
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
260
DNA accessibility
255
DNA binding
189
Transcription
58
DNA methylation
10
3D chromatin structure
Target of assay
221
histone
221
histone modification
114
broad histone mark
107
narrow histone mark
32
control
5
RNA binding protein
5
transcription factor
Date released
151
May, 2021
134
May, 2022
100
May, 2020
48
July, 2018
47
February, 2021
47
September, 2018
45
August, 2017
43
April, 2018
43
September, 2020
31
June, 2019
28
October, 2019
18
July, 2019
12
February, 2023
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
November, 2017
3
October, 2022
1
March, 2020
1
March, 2023
1
November, 2018
1
November, 2020
Available data
452
bigWig
450
bam
289
bed narrowPeak
280
fastq
153
zippedFastqFolder
120
tsv
103
bigBed narrowPeak
100
tagAlign
43
bed broadPeak
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
789
Homo sapiens
Biosample type
1488
tissue
789
primary cell
257
in vitro differentiated cells
233
cell line
10
stem cell
Organ
289
epithelium
265
pancreas
23
connective tissue
21
vasculature
20
blood vessel
20
kidney
18
vein
12
musculature of body
8
blood
8
bodily fluid
7
brain
7
liver
6
heart
4
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
448
AMP
232
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
431
hg19
341
GRCh38
Lab
415
AMP-T2D consortium
232
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
47
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
files.file_type!
bigBed broadPeak
month_released!
November, 2017
BIOSAMPLE
ASSAY
789 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
monocyte
85
15
1
1
pancreatic alpha cell
13
35
12
31
1
pancreatic beta cell
13
23
12
16
1
CD8-positive, alpha-beta T cell
33
2
1
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