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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
161
ATAC-seq
135
single cell RNA-seq
42
ChIP-seq
35
snATAC-seq
31
DNase-seq
17
pCHi-C
10
RRBS
6
Hi-C
6
WGBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
228
DNA accessibility
137
Transcription
42
DNA binding
17
DNA methylation
6
3D chromatin structure
Target of assay
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
100
May, 2020
48
July, 2018
47
February, 2021
43
April, 2018
36
June, 2019
33
May, 2021
24
September, 2020
21
August, 2017
15
September, 2018
14
July, 2019
12
February, 2023
11
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2019
2
November, 2020
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
256
bam
231
bigWig
216
fastq
zippedFastqFolder
120
tsv
79
bed narrowPeak
62
bigBed narrowPeak
33
bed broadPeak
33
bigBed broadPeak
32
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
hdf5
3
cool
2
csv
2
tagAlign
1
bed bed3
1
tar
Organism
447
Homo sapiens
Biosample type
1119
tissue
510
cell line
447
primary cell
146
in vitro differentiated cells
8
stem cell
Organ
165
epithelium
127
pancreas
20
connective tissue
20
kidney
16
vasculature
15
brain
11
blood vessel
8
blood
8
bodily fluid
7
heart
7
vein
5
liver
5
musculature of body
4
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
343
AMP
79
HPAP
24
T1D
1
ITG
Genome assembly (visualization)
242
hg19
188
GRCh38
Lab
340
AMP-T2D consortium
79
Klaus Kaestner, Upenn
27
Kyle Gaulton, UCSD
1
ITG
Audit category:
33
inconsistent ontology term
31
audit script error
assay_title!
total RNA-seq
files.file_type!
hdf5
zippedFastqFolder
target.investigated_as!
histone
BIOSAMPLE
ASSAY
447 results
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Clear Filters
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
WGBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
33
27
pancreatic alpha cell
13
12
6
1
6
pancreatic beta cell
10
12
6
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
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