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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
237
ChIP-seq
Assay category
237
DNA binding
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
118
May, 2021
38
August, 2017
32
September, 2018
21
October, 2019
19
June, 2019
3
August, 2021
3
May, 2019
3
November, 2017
Available data
230
bigWig
216
bed narrowPeak
203
bam
98
tagAlign
73
fastq
47
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
3
bed bed3+
Organism
237
Homo sapiens
Biosample type
628
tissue
237
primary cell
112
in vitro differentiated cells
38
cell line
2
stem cell
Organ
66
epithelium
58
pancreas
17
vasculature
16
blood vessel
15
vein
10
kidney
8
connective tissue
8
musculature of body
3
brain
3
liver
2
heart
1
eye
Project
153
AMP
84
T1D
Genome assembly (visualization)
230
hg19
198
GRCh38
Lab
123
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
files.file_type!
vcf
BIOSAMPLE
ASSAY
237 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
30
pancreatic endocrine cell
23
endothelial cell of umbilical vein
15
pancreatic ductal cell
13
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