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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
ChIP-seq
total RNA-seq
100
single cell RNA-seq
84
ATAC-seq
29
DNase-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
242
DNA binding
114
DNA accessibility
102
Transcription
Target of assay
203
histone
203
histone modification
103
narrow histone mark
100
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
97
May, 2021
58
August, 2017
55
June, 2019
48
July, 2018
46
September, 2018
45
May, 2020
43
April, 2018
29
October, 2019
9
November, 2017
5
July, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
February, 2021
2
November, 2020
Available data
461
bigWig
459
bam
295
bed narrowPeak
289
fastq
153
zippedFastqFolder
120
tsv
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
459
Homo sapiens
Biosample type
1006
tissue
459
primary cell
418
cell line
164
in vitro differentiated cells
3
stem cell
Organ
202
epithelium
166
pancreas
30
vasculature
26
connective tissue
25
blood vessel
25
kidney
20
vein
17
brain
12
musculature of body
8
heart
7
liver
4
eye
1
adipose tissue
Project
375
AMP
84
T1D
Genome assembly (visualization)
424
hg19
375
GRCh38
Lab
375
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
41
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
459 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
15
pancreatic beta cell
13
12
7
pancreatic alpha cell
13
12
6
pancreatic ductal cell
13
10
4
pancreatic acinar cell
8
12
5
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