Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
total RNA-seq
100
single cell RNA-seq
78
ATAC-seq
29
DNase-seq
4
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
247
DNA binding
108
DNA accessibility
102
Transcription
4
3D chromatin structure
Target of assay
230
histone
230
histone modification
118
broad histone mark
112
narrow histone mark
10
RNA binding protein
10
control
10
transcription factor
1
chromatin remodeller
Date released
117
May, 2021
48
July, 2018
47
June, 2019
46
August, 2017
46
September, 2018
45
May, 2020
43
April, 2018
21
October, 2019
9
July, 2019
9
November, 2017
7
August, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
1
February, 2021
1
November, 2020
Available data
461
bigWig
459
bam
295
bed narrowPeak
289
fastq
153
zippedFastqFolder
120
tsv
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
461
Homo sapiens
Biosample type
877
tissue
461
primary cell
418
cell line
132
in vitro differentiated cells
3
stem cell
Organ
191
epithelium
164
pancreas
27
vasculature
22
blood vessel
22
connective tissue
22
kidney
20
brain
15
vein
10
musculature of body
6
heart
6
liver
3
eye
1
adipose tissue
Project
367
AMP
84
T1D
10
HPAP
Genome assembly (visualization)
444
hg19
369
GRCh38
Lab
334
AMP-T2D consortium
117
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
34
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
461 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
FAIRE-seq
primary cell
monocyte
84
2
CD8-positive, alpha-beta T cell
33
2
pancreatic alpha cell
7
12
13
pancreatic beta cell
7
12
10
pancreatic ductal cell
13
10
4
+ See 66 more…
See all biosamples
Download