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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
RRBS
9
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
288
DNA accessibility
279
DNA binding
189
Transcription
58
DNA methylation
9
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
134
May, 2022
100
May, 2020
59
August, 2017
55
June, 2019
48
July, 2018
47
February, 2021
47
September, 2018
43
April, 2018
43
September, 2020
32
October, 2019
18
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
November, 2020
March, 2020
1
March, 2023
1
November, 2018
Available data
461
bigWig
459
bam
295
bed narrowPeak
289
fastq
153
zippedFastqFolder
120
tsv
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
hdf5
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
tar
Organism
840
Homo sapiens
Biosample type
1622
tissue
840
primary cell
542
cell line
252
in vitro differentiated cells
6
stem cell
Organ
312
epithelium
265
pancreas
34
vasculature
30
kidney
29
connective tissue
28
blood vessel
21
brain
21
vein
13
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
499
AMP
232
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
475
hg19
386
GRCh38
Lab
466
AMP-T2D consortium
232
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
50
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
lab.title!
Katalin Susztak, Upenn
month_released!
March, 2020
BIOSAMPLE
ASSAY
840 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
monocyte
85
15
1
1
pancreatic alpha cell
13
35
12
31
1
pancreatic beta cell
13
23
12
16
1
CD8-positive, alpha-beta T cell
33
2
1
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