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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
151
ATAC-seq
102
single cell RNA-seq
42
ChIP-seq
31
DNase-seq
17
pCHi-C
10
RRBS
8
snATAC-seq
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
191
DNA accessibility
104
Transcription
42
DNA binding
11
DNA methylation
7
3D chromatin structure
Target of assay
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
100
May, 2020
48
July, 2018
43
April, 2018
36
June, 2019
33
May, 2021
21
August, 2017
18
July, 2019
15
September, 2018
12
February, 2023
11
October, 2019
8
January, 2021
6
November, 2017
5
September, 2017
3
August, 2018
3
June, 2018
2
February, 2021
2
May, 2019
2
November, 2020
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
256
bam
221
bigWig
139
fastq
114
tsv
79
bed narrowPeak
62
bigBed narrowPeak
33
bed broadPeak
33
bigBed broadPeak
32
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
2
tagAlign
1
bed bed3
1
bedpe bed3+
1
tar
Organism
372
Homo sapiens
Biosample type
1119
tissue
511
cell line
372
primary cell
146
in vitro differentiated cells
8
stem cell
Organ
148
epithelium
108
pancreas
21
connective tissue
20
kidney
18
brain
18
vasculature
13
blood vessel
8
blood
8
bodily fluid
7
heart
7
vein
6
liver
5
musculature of body
4
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
347
AMP
24
T1D
1
ITG
Genome assembly (visualization)
243
hg19
178
GRCh38
Lab
344
AMP-T2D consortium
Klaus Kaestner, Upenn
27
Kyle Gaulton, UCSD
1
ITG
Audit category:
33
inconsistent ontology term
1
audit script error
assay_title!
total RNA-seq
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
histone
BIOSAMPLE
ASSAY
372 results
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Clear Filters
ATAC-seq
single cell RNA-seq
ChIP-seq
DNase-seq
pCHi-C
RRBS
snATAC-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic beta cell
7
12
6
pancreatic alpha cell
6
12
6
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
monocyte
15
1
1
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