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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
148
ATAC-seq
109
ChIP-seq
101
single cell RNA-seq
total RNA-seq
29
DNase-seq
9
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
178
DNA accessibility
109
DNA binding
103
Transcription
10
DNA methylation
6
3D chromatin structure
Target of assay
85
histone
85
histone modification
43
narrow histone mark
42
broad histone mark
19
control
8
RNA binding protein
8
transcription factor
Date released
100
May, 2020
August, 2017
55
June, 2019
48
July, 2018
47
September, 2018
43
April, 2018
32
October, 2019
18
July, 2019
18
May, 2021
12
February, 2023
9
November, 2017
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
February, 2021
2
November, 2020
1
March, 2020
November, 2018
Available data
317
bam
288
bigWig
153
fastq
148
bed narrowPeak
114
tsv
90
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
4
tagAlign
2
hic
1
bed bed3
1
bedpe bed3+
1
csv
1
tar
Organism
407
Homo sapiens
Biosample type
1255
tissue
450
cell line
407
primary cell
141
in vitro differentiated cells
8
stem cell
Organ
185
epithelium
125
pancreas
35
vasculature
30
kidney
29
blood vessel
28
connective tissue
22
vein
21
brain
13
musculature of body
9
heart
9
liver
5
eye
1
adipose tissue
Project
407
AMP
Genome assembly (visualization)
309
hg19
249
GRCh38
Lab
407
AMP-T2D consortium
232
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
1
audit script error
Audit category:
32
missing controlled_by
assay_title!
total RNA-seq
month_released!
August, 2017
November, 2018
BIOSAMPLE
ASSAY
407 results
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Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic ductal cell
4
13
10
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
pancreatic acinar cell
4
8
12
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
17
2
2
1
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