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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
274
ChIP-seq
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
28
DNase-seq
17
pCHi-C
9
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
285
DNA accessibility
274
DNA binding
186
Transcription
57
DNA methylation
9
3D chromatin structure
Target of assay
235
histone
235
histone modification
122
broad histone mark
113
narrow histone mark
33
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
134
May, 2022
100
May, 2020
59
August, 2017
48
July, 2018
47
February, 2021
47
June, 2019
47
September, 2018
43
April, 2018
43
September, 2020
32
October, 2019
17
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
August, 2018
3
June, 2018
3
October, 2022
2
November, 2020
March, 2020
1
March, 2023
1
November, 2018
Available data
452
bigWig
448
bam
289
bed narrowPeak
286
fastq
153
zippedFastqFolder
117
tsv
103
bigBed narrowPeak
100
tagAlign
46
bed broadPeak
46
bigBed broadPeak
32
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
5
hic
4
hdf5
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
tar
Organism
828
Homo sapiens
Biosample type
1422
tissue
828
primary cell
528
cell line
251
in vitro differentiated cells
6
stem cell
Organ
309
epithelium
262
pancreas
34
vasculature
30
kidney
29
connective tissue
28
blood vessel
21
brain
21
vein
13
musculature of body
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
487
AMP
232
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
466
hg19
377
GRCh38
Lab
454
AMP-T2D consortium
232
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
44
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
month_released!
August, 2018
March, 2020
organ_slims!
heart
BIOSAMPLE
ASSAY
828 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
monocyte
85
15
1
1
pancreatic alpha cell
13
35
10
31
1
pancreatic beta cell
13
23
12
16
1
CD8-positive, alpha-beta T cell
33
2
1
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