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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
260
ChIP-seq
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
19
DNase-seq
17
pCHi-C
10
Hi-C
7
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
276
DNA accessibility
260
DNA binding
189
Transcription
55
DNA methylation
10
3D chromatin structure
Target of assay
224
histone
224
histone modification
116
broad histone mark
108
narrow histone mark
31
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
134
May, 2022
100
May, 2020
59
August, 2017
48
July, 2018
47
February, 2021
47
September, 2018
43
April, 2018
43
September, 2020
42
June, 2019
23
October, 2019
15
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
7
August, 2020
5
September, 2017
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
436
bigWig
430
bam
289
fastq
270
bed narrowPeak
153
zippedFastqFolder
120
tsv
96
tagAlign
93
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
22
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
807
Homo sapiens
Biosample type
1397
tissue
807
primary cell
509
cell line
223
in vitro differentiated cells
10
stem cell
Organ
309
epithelium
265
pancreas
35
vasculature
kidney
29
blood vessel
29
connective tissue
22
vein
21
brain
13
musculature of body
9
heart
8
blood
8
bodily fluid
5
eye
5
liver
1
adipose tissue
1
bone element
1
bone marrow
Project
466
AMP
232
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
454
hg19
361
GRCh38
Lab
433
AMP-T2D consortium
232
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
42
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
month_released!
August, 2021
organ_slims!
kidney
BIOSAMPLE
ASSAY
807 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
monocyte
85
15
1
1
pancreatic alpha cell
13
35
12
31
1
pancreatic beta cell
13
23
12
16
1
CD8-positive, alpha-beta T cell
33
2
1
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