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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
ChIP-seq
total RNA-seq
198
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
27
DNase-seq
17
pCHi-C
10
RRBS
9
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
281
DNA accessibility
245
DNA binding
189
Transcription
58
DNA methylation
9
3D chromatin structure
Target of assay
216
histone
216
histone modification
110
broad histone mark
106
narrow histone mark
32
control
10
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
134
May, 2022
100
May, 2020
57
August, 2017
51
June, 2019
48
July, 2018
47
February, 2021
47
September, 2018
43
April, 2018
43
September, 2020
October, 2019
18
July, 2019
12
February, 2023
8
January, 2021
7
August, 2020
6
November, 2017
5
September, 2017
4
August, 2021
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
430
bigWig
420
bam
284
fastq
264
bed narrowPeak
153
zippedFastqFolder
120
tsv
100
tagAlign
86
bigBed narrowPeak
40
bed broadPeak
40
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
Organism
799
Homo sapiens
Biosample type
1432
tissue
799
primary cell
203
in vitro differentiated cells
169
cell line
10
stem cell
Organ
277
epithelium
265
pancreas
28
connective tissue
19
kidney
18
brain
13
musculature of body
12
vasculature
8
blood
8
bodily fluid
8
heart
8
liver
7
blood vessel
4
eye
1
adipose tissue
1
bone element
1
bone marrow
1
vein
Project
458
AMP
232
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
442
hg19
357
GRCh38
Lab
425
AMP-T2D consortium
232
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
45
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
month_released!
October, 2019
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
799 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
monocyte
85
15
1
1
pancreatic alpha cell
13
35
12
31
1
pancreatic beta cell
13
23
12
16
1
CD8-positive, alpha-beta T cell
33
2
1
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