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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
262
ChIP-seq
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
17
pCHi-C
10
RRBS
8
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
285
DNA accessibility
262
DNA binding
189
Transcription
58
DNA methylation
8
3D chromatin structure
Target of assay
222
histone
222
histone modification
113
broad histone mark
109
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
134
May, 2022
100
May, 2020
59
August, 2017
55
June, 2019
48
July, 2018
47
February, 2021
47
September, 2018
43
April, 2018
43
September, 2020
18
July, 2019
12
February, 2023
11
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
November, 2020
1
March, 2023
1
November, 2018
Available data
446
bigWig
439
bam
289
fastq
282
bed narrowPeak
153
zippedFastqFolder
120
tsv
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
819
Homo sapiens
Biosample type
1744
tissue
819
primary cell
549
cell line
258
in vitro differentiated cells
10
stem cell
Organ
313
epithelium
265
pancreas
35
vasculature
30
kidney
29
blood vessel
29
connective tissue
vein
21
brain
13
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
478
AMP
232
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
459
hg19
374
GRCh38
Lab
445
AMP-T2D consortium
232
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
50
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
organ_slims!
thymus
vein
BIOSAMPLE
ASSAY
819 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
monocyte
85
15
1
1
pancreatic alpha cell
13
35
12
31
1
pancreatic beta cell
13
23
12
16
1
CD8-positive, alpha-beta T cell
33
2
1
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