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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
93
single cell RNA-seq
39
ATAC-seq
27
DNase-seq
total RNA-seq
8
WGBS
3
pCHi-C
2
Hi-C
1
RRBS
1
small RNA-seq
Assay category
118
DNA binding
94
Transcription
66
DNA accessibility
9
DNA methylation
2
3D chromatin structure
Target of assay
90
histone
90
histone modification
54
broad histone mark
36
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
21
May, 2019
14
July, 2019
October, 2019
5
March, 2020
Available data
168
bed narrowPeak
140
bigWig
115
bam
96
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
bedpe bed3+
2
hic
Organism
292
Homo sapiens
Biosample type
292
tissue
cell line
9
primary cell
Organ
292
heart
245
kidney
219
pancreas
186
liver
163
brain
100
blood vessel
100
vasculature
96
bone element
90
adipose tissue
90
connective tissue
77
musculature of body
50
limb
45
artery
30
eye
25
spleen
20
lung
18
ureter
13
epithelium
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
small intestine
1
stomach
1
urinary bladder
Project
292
AMP
Genome assembly (visualization)
174
GRCh38
95
hg19
Lab
252
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
assay_title!
total RNA-seq
biosample_type!
cell line
month_released!
October, 2019
BIOSAMPLE
ASSAY
292 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
2
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
36
2
heart right ventricle
13
17
1
2
1
1
heart
9
1
18
1
1
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