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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
907
ChIP-seq
222
ATAC-seq
178
DNase-seq
173
single cell RNA-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
907
DNA binding
431
DNA accessibility
189
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
220
October, 2019
195
August, 2017
179
August, 2021
163
June, 2019
115
May, 2019
95
February, 2021
82
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
47
September, 2023
46
July, 2019
May, 2022
40
May, 2024
30
March, 2020
26
November, 2018
23
October, 2017
21
November, 2019
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
988
bam
946
bed narrowPeak
857
bigWig
561
bigBed narrowPeak
262
fastq
238
tagAlign
213
bed broadPeak
204
bed bed3+
176
bigBed broadPeak
150
tsv
97
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1690
Homo sapiens
Biosample type
1699
tissue
705
primary cell
549
cell line
258
in vitro differentiated cells
10
stem cell
Organ
298
heart
248
brain
244
kidney
204
pancreas
170
liver
126
blood vessel
126
vasculature
115
limb
96
bone element
92
connective tissue
91
adipose tissue
75
musculature of body
71
artery
38
nerve
37
eye
25
spleen
20
lung
18
ureter
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1609
AMP
47
KPMP
24
T1D
19
LungMap
Genome assembly (visualization)
963
GRCh38
820
hg19
Lab
1467
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
22
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
3
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
files.file_type!
csv
month_released!
May, 2022
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
1699 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
kidney
27
75
13
59
6
1
1
1
liver
145
2
3
1
1
1
1
islet of Langerhans
71
50
1
6
7
4
3
1
1
4
bone element
84
heart left ventricle
35
2
3
18
4
1
1
1
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