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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
880
ChIP-seq
184
ATAC-seq
116
single cell RNA-seq
110
DNase-seq
85
RNA microarray
27
WGBS
25
pCHi-C
22
snATAC-seq
15
Hi-C
15
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
Assay category
880
DNA binding
319
DNA accessibility
131
Transcription
37
DNA methylation
15
3D chromatin structure
Target of assay
608
histone modification
607
histone
314
narrow histone mark
293
broad histone mark
181
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
216
October, 2019
195
August, 2017
115
May, 2019
100
August, 2021
95
June, 2019
93
February, 2021
82
February, 2023
82
November, 2017
74
October, 2018
57
April, 2019
50
May, 2020
48
December, 2017
43
July, 2019
40
May, 2022
40
May, 2024
31
March, 2020
26
November, 2018
23
October, 2017
21
November, 2019
19
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
May, 2021
Available data
909
bam
831
bed narrowPeak
787
bigWig
474
bigBed narrowPeak
280
fastq
238
tagAlign
145
bed broadPeak
140
tsv
137
bed bed3+
108
bigBed broadPeak
85
txt
24
bed bedMethyl
24
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
1487
Homo sapiens
Biosample type
1496
tissue
811
primary cell
534
cell line
256
in vitro differentiated cells
10
stem cell
Organ
298
heart
kidney
248
brain
221
pancreas
191
liver
126
blood vessel
126
vasculature
115
limb
96
bone element
92
connective tissue
91
adipose tissue
77
musculature of body
71
artery
38
nerve
37
eye
25
spleen
20
lung
18
ureter
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1453
AMP
24
T1D
19
LungMap
Genome assembly (visualization)
799
GRCh38
768
hg19
Lab
1367
AMP-T2D consortium
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
files.file_type!
ibed
lab.title!
Maike Sander, UCSD
organ_slims!
kidney
BIOSAMPLE
ASSAY
1496 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
tissue
liver
145
20
1
2
3
1
1
1
1
islet of Langerhans
71
67
6
1
4
7
3
1
4
1
bone element
84
heart left ventricle
35
2
18
3
4
1
1
1
left cardiac atrium
40
18
1
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