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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
749
ChIP-seq
179
single cell RNA-seq
175
ATAC-seq
174
DNase-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
23
WGBS
15
Hi-C
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
749
DNA binding
381
DNA accessibility
192
Transcription
33
DNA methylation
15
3D chromatin structure
Target of assay
558
histone
558
histone modification
280
narrow histone mark
278
broad histone mark
141
control
55
transcription factor
26
RNA binding protein
other context
3
other post-translational modification
2
nucleotide modification
Date released
215
October, 2019
163
June, 2019
141
August, 2017
115
August, 2021
115
May, 2019
100
February, 2021
82
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
47
September, 2023
42
July, 2019
40
May, 2024
29
March, 2020
23
October, 2017
21
November, 2019
20
May, 2022
19
April, 2020
16
November, 2018
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
868
bed narrowPeak
864
bam
758
bigWig
509
bigBed narrowPeak
210
bed broadPeak
199
bed bed3+
194
fastq
173
bigBed broadPeak
168
tagAlign
147
tsv
98
txt
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
1
tagAlign bed3+
Organism
1479
Homo sapiens
Biosample type
1488
tissue
832
primary cell
243
in vitro differentiated cells
162
cell line
10
stem cell
Organ
298
heart
248
brain
222
pancreas
liver
185
kidney
126
blood vessel
126
vasculature
115
limb
96
bone element
92
connective tissue
91
adipose tissue
77
musculature of body
71
artery
38
nerve
37
eye
22
spleen
20
lung
18
ureter
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1398
AMP
47
KPMP
24
T1D
19
LungMap
Genome assembly (visualization)
807
GRCh38
737
hg19
Lab
1302
AMP-T2D consortium
47
KPMP
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
29
Katalin Susztak, Upenn
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
files.file_type!
xls
organ_slims!
liver
target.investigated_as!
other context
BIOSAMPLE
ASSAY
1488 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
71
6
68
1
7
4
3
1
1
4
kidney
27
64
11
13
6
1
1
1
bone element
84
heart left ventricle
35
18
2
3
1
4
1
1
left cardiac atrium
40
18
1
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