Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
784
ChIP-seq
216
ATAC-seq
177
DNase-seq
17
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
784
DNA binding
397
DNA accessibility
22
Transcription
17
DNA methylation
Target of assay
523
histone modification
522
histone
268
narrow histone mark
254
broad histone mark
167
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
178
October, 2019
163
June, 2019
115
May, 2019
101
August, 2017
80
April, 2019
74
October, 2018
70
November, 2017
68
February, 2023
64
August, 2021
50
May, 2020
48
December, 2017
40
May, 2024
38
May, 2022
33
July, 2019
26
November, 2018
20
November, 2019
15
October, 2017
8
February, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
March, 2020
1
March, 2019
Available data
1006
bam
984
bed narrowPeak
877
bigWig
561
bigBed narrowPeak
280
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
151
tsv
98
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1213
Homo sapiens
Biosample type
1220
tissue
492
cell line
489
primary cell
173
in vitro differentiated cells
3
stem cell
Organ
223
brain
196
heart
166
pancreas
161
kidney
159
liver
118
blood vessel
118
vasculature
110
limb
69
artery
54
musculature of body
48
adipose tissue
48
connective tissue
38
nerve
30
eye
24
spleen
18
ureter
12
bone element
12
epithelium
12
skeleton
1
pituitary gland
Project
1218
AMP
2
T1D
Genome assembly (visualization)
947
GRCh38
828
hg19
Lab
1077
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
1220 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
liver
122
20
2
1
kidney
27
64
13
1
islet of Langerhans
36
38
1
6
1
body of pancreas
35
4
4
2
2
coronary artery
5
36
2
+ See 140 more…
See all biosamples
Download