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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
109
single cell RNA-seq
20
pCHi-C
16
small RNA-seq
3
snDrop-seq
2
RNA microarray
1
ATAC-seq
Assay category
125
Transcription
1
DNA accessibility
Date released
98
August, 2021
21
March, 2020
16
July, 2019
8
February, 2021
6
April, 2018
2
December, 2019
Available data
784
bam
668
bed narrowPeak
624
bigWig
357
bigBed narrowPeak
235
fastq
199
bed bed3+
193
bed broadPeak
176
bigBed broadPeak
162
tagAlign
151
tsv
98
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
151
Homo sapiens
Biosample type
151
tissue
108
primary cell
6
cell line
4
in vitro differentiated cells
4
stem cell
Organ
96
heart
11
kidney
10
pancreas
7
blood vessel
7
vasculature
6
brain
4
liver
3
adipose tissue
3
connective tissue
2
artery
2
intestine
2
musculature of body
1
adrenal gland
1
epithelium
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
151
AMP
Genome assembly (visualization)
23
hg19
22
GRCh38
Lab
151
AMP-T2D consortium
Audit category:
7
audit script error
2
inconsistent ontology term
assay_title!
total RNA-seq
month_released!
February, 2023
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
151 results
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single cell RNA-seq
pCHi-C
small RNA-seq
snDrop-seq
RNA microarray
ATAC-seq
tissue
heart left ventricle
18
1
right cardiac atrium
18
1
heart right ventricle
17
1
left cardiac atrium
18
islet of Langerhans
6
1
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