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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
total RNA-seq
13
single cell RNA-seq
1
snATAC-seq
Assay category
13
Transcription
1
DNA accessibility
Date released
89
February, 2021
8
August, 2021
1
May, 2022
Available data
861
bed narrowPeak
846
bam
767
bigWig
499
bigBed narrowPeak
222
tagAlign
193
bed broadPeak
178
bed bed3+
170
bigBed broadPeak
164
fastq
141
tsv
98
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
98
Homo sapiens
Biosample type
98
tissue
3
in vitro differentiated cells
1
cell line
Organ
84
bone element
13
kidney
1
musculature of body
Project
98
AMP
Genome assembly (visualization)
1
hg19
Lab
90
AMP-T2D consortium
8
Katalin Susztak, Upenn
Audit category:
84
inconsistent ontology term
6
audit script error
assay_title!
total RNA-seq
lab.title!
Klaus Kaestner, Upenn
organ_slims!
pancreas
BIOSAMPLE
ASSAY
98 results
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RNA microarray
single cell RNA-seq
snATAC-seq
tissue
bone element
84
kidney
13
skeletal muscle tissue
1
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