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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
834
ChIP-seq
total RNA-seq
214
ATAC-seq
173
DNase-seq
168
single cell RNA-seq
28
snATAC-seq
25
WGBS
24
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
Assay category
834
DNA binding
419
DNA accessibility
184
Transcription
36
DNA methylation
15
3D chromatin structure
Target of assay
574
histone modification
573
histone
306
narrow histone mark
267
broad histone mark
171
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
195
August, 2017
194
October, 2019
173
August, 2021
160
June, 2019
February, 2021
82
November, 2017
80
April, 2019
74
October, 2018
65
May, 2019
50
May, 2020
48
December, 2017
47
February, 2023
47
September, 2023
42
July, 2019
40
May, 2022
40
May, 2024
29
March, 2020
26
November, 2018
23
October, 2017
21
November, 2019
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
915
bam
876
bed narrowPeak
811
bigWig
499
bigBed narrowPeak
280
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
136
tsv
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
9
txt
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1510
Homo sapiens
Biosample type
1519
tissue
765
primary cell
529
cell line
254
in vitro differentiated cells
8
stem cell
Organ
298
heart
248
brain
241
kidney
222
pancreas
190
liver
blood vessel
126
vasculature
109
limb
92
connective tissue
91
adipose tissue
77
musculature of body
71
artery
38
nerve
37
eye
25
spleen
20
lung
18
ureter
13
epithelium
5
gonad
5
ovary
4
bone element
4
skeleton
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1429
AMP
47
KPMP
24
T1D
19
LungMap
Genome assembly (visualization)
854
GRCh38
785
hg19
Lab
1249
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
6
inconsistent ontology term
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
lab.title!
Anna Gloyn, Oxford
month_released!
February, 2021
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
1519 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
kidney
27
75
13
59
6
1
1
1
liver
145
20
2
3
1
1
1
1
islet of Langerhans
71
68
1
6
7
4
3
1
1
4
heart left ventricle
35
2
3
18
4
1
1
1
left cardiac atrium
40
1
18
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