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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
904
ChIP-seq
185
ATAC-seq
178
DNase-seq
86
RNA microarray
71
single cell RNA-seq
27
WGBS
25
pCHi-C
22
snATAC-seq
16
small RNA-seq
14
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
904
DNA binding
389
DNA accessibility
87
Transcription
38
DNA methylation
14
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
220
October, 2019
195
August, 2017
163
June, 2019
115
May, 2019
101
February, 2021
August, 2021
82
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
47
September, 2023
46
July, 2019
40
May, 2022
40
May, 2024
31
March, 2020
23
November, 2018
23
October, 2017
21
November, 2019
19
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
1003
bam
917
bed narrowPeak
874
bigWig
558
bigBed narrowPeak
277
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
90
txt
53
tsv
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1542
Homo sapiens
Biosample type
1550
tissue
837
primary cell
520
cell line
223
in vitro differentiated cells
10
stem cell
Organ
248
brain
221
pancreas
206
heart
191
liver
156
kidney
120
blood vessel
120
vasculature
115
limb
96
bone element
91
connective tissue
90
adipose tissue
77
musculature of body
69
artery
38
nerve
37
eye
22
spleen
20
lung
18
ureter
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1460
AMP
47
KPMP
24
T1D
19
LungMap
Genome assembly (visualization)
885
GRCh38
855
hg19
Lab
1374
AMP-T2D consortium
47
KPMP
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
lab.title!
Katalin Susztak, Upenn
month_released!
August, 2021
target.investigated_as!
other context
BIOSAMPLE
ASSAY
1550 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
liver
145
20
2
1
3
1
1
1
1
islet of Langerhans
71
68
1
6
4
7
2
1
1
4
kidney
27
13
53
1
1
bone element
84
body of pancreas
35
4
4
2
2
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