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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
867
ChIP-seq
total RNA-seq
252
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
Assay category
867
DNA binding
462
DNA accessibility
190
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
220
October, 2019
195
August, 2017
179
August, 2021
163
June, 2019
115
May, 2019
February, 2021
82
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
47
September, 2023
46
July, 2019
40
May, 2022
31
March, 2020
26
November, 2018
23
October, 2017
21
November, 2019
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
998
bam
936
bed narrowPeak
837
bigWig
561
bigBed narrowPeak
280
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
143
tsv
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
9
txt
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1596
Homo sapiens
Biosample type
1605
tissue
794
primary cell
531
cell line
254
in vitro differentiated cells
10
stem cell
Organ
258
heart
248
brain
241
kidney
222
pancreas
190
liver
126
blood vessel
126
vasculature
109
limb
92
connective tissue
91
adipose tissue
77
musculature of body
71
artery
38
nerve
37
eye
25
spleen
20
lung
18
ureter
13
epithelium
5
gonad
5
ovary
4
bone element
4
skeleton
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1515
AMP
47
KPMP
24
T1D
19
LungMap
Genome assembly (visualization)
915
GRCh38
851
hg19
Lab
1375
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
6
inconsistent ontology term
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
lab.title!
Patrick T. Ellinor, Broad
month_released!
February, 2021
BIOSAMPLE
ASSAY
1605 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
kidney
27
75
13
59
6
1
1
1
liver
145
20
2
3
1
1
1
1
islet of Langerhans
71
68
1
6
7
4
3
1
1
4
heart left ventricle
35
2
3
18
4
1
1
1
body of pancreas
35
4
4
2
2
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