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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
581
ChIP-seq
260
ATAC-seq
178
DNase-seq
171
single cell RNA-seq
87
RNA microarray
27
WGBS
25
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
581
DNA binding
460
DNA accessibility
187
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
chromatin remodeller
2
nucleotide modification
Date released
179
August, 2021
163
June, 2019
145
August, 2017
101
February, 2021
91
October, 2019
82
February, 2023
82
May, 2019
63
October, 2018
57
April, 2019
54
November, 2017
47
September, 2023
46
July, 2019
44
December, 2017
40
May, 2022
29
March, 2020
26
November, 2018
25
May, 2024
23
May, 2020
21
November, 2019
21
October, 2017
14
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
761
bam
716
bed narrowPeak
607
bigWig
451
bigBed narrowPeak
250
fastq
199
bed bed3+
198
bed broadPeak
176
bigBed broadPeak
151
tsv
128
tagAlign
98
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1395
Homo sapiens
Biosample type
1401
tissue
725
primary cell
500
cell line
200
in vitro differentiated cells
9
stem cell
Organ
260
heart
239
kidney
190
pancreas
145
liver
134
brain
108
blood vessel
108
vasculature
100
limb
96
bone element
79
adipose tissue
79
connective tissue
68
musculature of body
65
artery
35
eye
30
nerve
23
spleen
18
ureter
13
epithelium
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1332
AMP
47
KPMP
22
T1D
Genome assembly (visualization)
710
GRCh38
618
hg19
Lab
1165
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
25
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
25
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
lab.title!
Xin Sun, UCSD
target.investigated_as!
chromatin remodeller
narrow histone mark
BIOSAMPLE
ASSAY
1401 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
kidney
17
75
13
64
6
1
1
1
liver
101
20
2
1
3
1
1
1
1
islet of Langerhans
34
68
1
6
4
7
3
1
1
4
bone element
84
heart left ventricle
26
2
3
18
4
1
1
1
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