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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
852
ChIP-seq
178
DNase-seq
124
ATAC-seq
113
single cell RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
16
small RNA-seq
13
Hi-C
11
RRBS
4
FAIRE-seq
3
snDrop-seq
2
snATAC-seq
Assay category
852
DNA binding
308
DNA accessibility
129
Transcription
38
DNA methylation
13
3D chromatin structure
Target of assay
581
histone modification
580
histone
307
narrow histone mark
273
broad histone mark
182
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
220
October, 2019
195
August, 2017
163
June, 2019
115
May, 2019
101
February, 2021
99
August, 2021
82
November, 2017
80
April, 2019
74
October, 2018
69
February, 2023
50
May, 2020
48
December, 2017
46
July, 2019
31
March, 2020
26
November, 2018
October, 2017
21
November, 2019
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
3
December, 2019
2
January, 2018
2
May, 2022
1
August, 2022
Available data
972
bam
830
bed narrowPeak
803
bigWig
555
bigBed narrowPeak
244
fastq
224
tagAlign
208
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
151
tsv
90
txt
25
bed bedMethyl
25
bigBed bedMethyl
9
bedpe bed3+
9
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
1446
Homo sapiens
Biosample type
1454
tissue
511
cell line
467
primary cell
209
in vitro differentiated cells
8
stem cell
Organ
258
heart
232
brain
171
liver
168
pancreas
126
blood vessel
126
vasculature
115
limb
109
kidney
96
bone element
91
connective tissue
90
adipose tissue
77
musculature of body
71
artery
38
nerve
37
eye
24
spleen
18
ureter
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
1452
AMP
2
T1D
Genome assembly (visualization)
832
GRCh38
804
hg19
Lab
1454
AMP-T2D consortium
Katalin Susztak, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
lab.title!
Katalin Susztak, Upenn
month_released!
October, 2017
BIOSAMPLE
ASSAY
1454 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snDrop-seq
snATAC-seq
tissue
liver
145
2
1
3
1
1
1
1
islet of Langerhans
71
1
34
6
4
1
1
1
1
bone element
84
heart left ventricle
35
3
2
18
4
1
1
1
kidney
27
13
6
1
1
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