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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
790
ChIP-seq
total RNA-seq
198
ATAC-seq
174
single cell RNA-seq
171
DNase-seq
87
RNA microarray
24
pCHi-C
23
WGBS
17
snATAC-seq
14
small RNA-seq
12
Hi-C
9
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
790
DNA binding
388
DNA accessibility
188
Transcription
32
DNA methylation
12
3D chromatin structure
Target of assay
555
histone modification
554
histone
292
narrow histone mark
262
broad histone mark
158
control
77
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
217
October, 2019
178
August, 2021
159
June, 2019
137
August, 2017
113
May, 2019
101
February, 2021
82
November, 2017
80
April, 2019
69
February, 2023
50
May, 2020
48
December, 2017
47
September, 2023
42
July, 2019
40
May, 2024
25
March, 2020
23
October, 2018
22
May, 2022
19
April, 2020
19
November, 2018
18
October, 2017
14
May, 2023
7
December, 2018
7
January, 2019
3
December, 2019
2
January, 2018
1
May, 2021
1
November, 2019
Available data
861
bed narrowPeak
846
bam
767
bigWig
499
bigBed narrowPeak
222
tagAlign
193
bed broadPeak
178
bed bed3+
170
bigBed broadPeak
164
fastq
141
tsv
98
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
1522
Homo sapiens
Biosample type
1524
tissue
576
primary cell
490
cell line
255
in vitro differentiated cells
10
stem cell
Organ
298
heart
249
kidney
248
brain
pancreas
191
liver
126
blood vessel
126
vasculature
115
limb
96
bone element
92
connective tissue
91
adipose tissue
77
musculature of body
71
artery
38
nerve
37
eye
25
spleen
20
lung
18
ureter
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1457
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
840
GRCh38
709
hg19
Lab
1304
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
assay_title!
total RNA-seq
month_released!
August, 2020
organ_slims!
pancreas
BIOSAMPLE
ASSAY
1524 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
small RNA-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
tissue
kidney
27
75
64
13
6
1
1
1
liver
145
20
1
2
1
3
1
1
1
bone element
84
heart left ventricle
35
2
18
3
1
4
1
1
left cardiac atrium
40
18
1
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