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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
604
ChIP-seq
total RNA-seq
252
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
Assay category
604
DNA binding
462
DNA accessibility
190
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
181
October, 2019
179
August, 2021
163
June, 2019
122
August, 2017
February, 2021
82
February, 2023
59
May, 2019
55
October, 2018
50
May, 2020
47
September, 2023
46
July, 2019
45
December, 2017
43
April, 2019
40
May, 2022
40
November, 2017
31
March, 2020
26
November, 2018
21
November, 2019
20
May, 2024
19
April, 2020
14
May, 2023
13
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
3
January, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
776
bam
723
bed narrowPeak
624
bigWig
357
bigBed narrowPeak
235
fastq
199
bed bed3+
193
bed broadPeak
176
bigBed broadPeak
162
tagAlign
143
tsv
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
9
txt
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1337
Homo sapiens
Biosample type
1342
tissue
672
primary cell
512
cell line
198
in vitro differentiated cells
9
stem cell
Organ
241
heart
231
kidney
181
pancreas
178
brain
165
liver
90
blood vessel
90
vasculature
75
limb
72
connective tissue
71
adipose tissue
61
musculature of body
57
artery
37
eye
22
nerve
21
spleen
20
lung
18
ureter
13
epithelium
5
gonad
5
ovary
4
bone element
4
skeleton
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1252
AMP
47
KPMP
24
T1D
19
LungMap
Genome assembly (visualization)
713
GRCh38
653
hg19
Lab
1092
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
6
inconsistent ontology term
4
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
total RNA-seq
month_released!
February, 2021
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
1342 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
kidney
17
75
13
59
6
1
1
1
islet of Langerhans
57
68
1
6
7
4
3
1
1
4
liver
123
20
2
3
1
1
1
1
heart left ventricle
20
2
3
18
4
1
1
1
coronary artery
5
36
2
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